Publications of the Schuler Group

ZORA Publication List

Publications

• 2016

  • Borgia, Alessandro; Zheng, Wenwei; Buholzer, Karin; Borgia, Madeleine B; Schüler, Anja; Hofmann, Hagen; Soranno, Andrea; Nettels, Daniel; Gast, Klaus; Grishaev, Alexander; Best, Robert B; Schuler, Benjamin (2016). Consistent view of polypeptide chain expansion in chemical denaturants from multiple experimental methods. Journal of the American Chemical Society, 138(36):11714-11726.
  • Zheng, Wenwei; Borgia, Alessandro; Buholzer, Karin; Grishaev, Alexander; Schuler, Benjamin; Best, Robert B (2016). Probing the Action of Chemical Denaturant on an Intrinsically Disordered Protein by Simulation and Experiment. Journal of the American Chemical Society, 138(36):11702-11713.
  • Aznauryan, Mikayel; Delgado, Leonildo; Soranno, Andrea; Nettels, Daniel; Huang, Jie-Rong; Labhardt, Alexander M; Grzesiek, Stephan; Schuler, Benjamin (2016). Comprehensive structural and dynamical view of an unfolded protein from the combination of single-molecule FRET, NMR, and SAXS. Proceedings of the National Academy of Sciences of the United States of America, 113(37):E5389-E5398.
  • Schuler, Benjamin; Soranno, Andrea; Hofmann, Hagen; Nettels, Daniel (2016). Single-molecule FRET spectroscopy and the polymer physics of unfolded and intrinsically disordered proteins. Annual Review of Biophysics, 45:207-231.
  • Roderer, Daniel; Benke, Stephan; Schuler, Benjamin; Glockshuber, Rudi (2016). Soluble oligomers of the pore-forming toxin cytolysin a from escherichia coli are off-pathway products of pore assembly. Journal of Biological Chemistry, 291(11):5652-5663.
  • Benke, Stephan; Roderer, Daniel; Wunderlich, Bengt; Nettels, Daniel; Glockshuber, Rudi; Schuler, Benjamin (2016). Erratum: The assembly dynamics of the cytolytic pore toxin ClyA. Nature Communications, 7:10650.

• 2015

  • Nettels, Daniel; Haenni, Dominik; Maillot, Sacha; Gueye, Moussa; Barth, Anders; Hirschfeld, Verena; Hübner, Christian G; Léonard, Jérémie; Schuler, Benjamin (2015). Excited-state annihilation reduces power dependence of single-molecule FRET experiments. Physical Chemistry Chemical Physics (PCCP), 17(48):32304-32315.
  • Zheng, Wenwei; Borgia, Alessandro; Borgia, Madeleine B; Schuler, Benjamin; Best, Robert B (2015). Empirical Optimization of Interactions between Proteins and Chemical Denaturants in Molecular Simulations. Journal of Chemical Theory and Computation, 11(11):5543-5553.
  • Schuler, Benjamin D; Smith, Janet L (2015). Editorial overview: Biophysical and molecular biological methods: Structure, dynamics, and single molecules. Current Opinion in Structural Biology, 34:iv-vi.
  • Czar, Martin F; Zosel, Franziska; König, Iwo; Nettels, Daniel; Wunderlich, Bengt; Schuler, Benjamin; Zarrine-Afsar, Arash; Jockusch, Rebecca A (2015). Gas-Phase FRET Efficiency Measurements To Probe the Conformation of Mass-Selected Proteins. Analytical Chemistry, 87(15):7559-7565.
  • König, Iwo; Zarrine-Afsar, Arash; Aznauryan, Mikayel; Soranno, Andrea; Wunderlich, Bengt; Dingfelder, Fabian; Stüber, Jakob C; Plückthun, Andreas; Nettels, Daniel; Schuler, Benjamin (2015). Single-molecule spectroscopy of protein conformational dynamics in live eukaryotic cells. Nature Methods, 12(8):773-779.
  • Best, Robert B; Hofmann, Hagen; Nettels, Daniel; Schuler, Benjamin (2015). Quantitative interpretation of FRET experiments via molecular simulation: force field and validation. Biophysical Journal, 108(11):2721-2731.
  • Yuan, Haifeng; Gaiduk, Alexander; Siekierzycka, Joanna R; Fujiyoshi, Satoru; Matsushita, Michio; Nettels, Daniel; Schuler, Benjamin; Seidel, Claus A M; Orrit, Michel (2015). Temperature-cycle microscopy reveals single-molecule conformational heterogeneity. Physical Chemistry Chemical Physics (PCCP), 17(9):6532-6544.
  • Borgia, Alessandro; Kemplen, Katherine R; Borgia, Madeleine B; Soranno, Andrea; Shammas, Sarah; Wunderlich, Bengt; Nettels, Daniel; Best, Robert B; Clarke, Jane; Schuler, Benjamin (2015). Transient misfolding dominates multidomain protein folding. Nature Communications, 6(8861):online.
  • Benke, Stephan; Roderer, Daniel; Wunderlich, Bengt; Nettels, Daniel; Glockshuber, Rudi; Schuler, Benjamin (2015). The assembly dynamics of the cytolytic pore toxin ClyA. Nature Communications, 6:6198.

• 2014

  • Hofmann, Hagen; Hillger, Frank; Delley, Cyrille; Hoffmann, Armin; Pfeil, Shawn H; Nettels, Daniel; Lipman, Everett A; Schuler, Benjamin (2014). Role of denatured-state properties in chaperonin action probed by single-molecule spectroscopy. Biophysical Journal, 107(12):2882-2893.
  • Roderer, Daniel; Benke, Stephan; Müller, Marcus; Fäh-Rechsteiner, Helene; Ban, Nenad; Schuler, Benjamin; Glockshuber, Rudi (2014). Characterization of variants of the pore-forming toxin ClyA from Escherichia coli controlled by a redox switch. Biochemistry, 53(40):6357-6369.
  • Kellner, Ruth; Hofmann, Hagen; Barducci, Alessandro; Wunderlich, Bengt; Nettels, Daniel; Schuler, Benjamin (2014). Single-molecule spectroscopy reveals chaperone-mediated expansion of substrate protein. Proceedings of the National Academy of Sciences of the United States of America, 111(37):13355-13360.
  • Wuttke, René; Hofmann, Hagen; Nettels, Daniel; Borgia, Madeleine B; Mittal, Jeetain; Best, Robert B; Schuler, Benjamin (2014). Temperature-dependent solvation modulates the dimensions of disordered proteins. Proceedings of the National Academy of Sciences of the United States of America, 111(14):5213-5218.
  • Weisenburger, Siegfried; Jing, Bo; Hänni, Dominik; Reymond, Luc; Schuler, Benjamin; Renn, Alois; Sandoghdar, Vahid (2014). Cryogenic colocalization microscopy for nanometer-distance measurements. ChemPhysChem, 15(4):763-770.
  • Soranno, Andrea; Koenig, Iwo; Borgia, Madeleine B; Hofmann, Hagen; Zosel, Franziska; Nettels, Daniel; Schuler, Benjamin (2014). Single-molecule spectroscopy reveals polymer effects of disordered proteins in crowded environments. Proceedings of the National Academy of Sciences of the United States of America, 111(13):4874-4879.
  • Pochorovski, Igor; Knehans, Tim; Nettels, Daniel; Müller, Astrid M; Schweizer, W Bernd; Caflisch, Amedeo; Schuler, Benjamin; Diederich, François (2014). Experimental and computational study of BODIPY dye-labeled cavitand dynamics. Journal of the American Chemical Society, 136(6):2441-2449.
  • Brucale, Marco; Schuler, Benjamin; Samorì, Bruno (2014). Single-molecule studies of intrinsically disordered proteins. Chemical Reviews, 114(6):3281-3317.

• 2013

  • Schuler, Benjamin; Clarke, Jane (2013). Biophysics: Rough passage across a barrier. Nature, 502(7473):632-633.
  • Hofmann, Hagen; Nettels, Daniel; Schuler, Benjamin (2013). Single-molecule spectroscopy of the unexpected collapse of an unfolded protein at low pH. Journal of Chemical Physics, 139(12):121930.
  • Aznauryan, Mikayel; Nettels, Daniel; Holla, Andrea; Hofmann, Hagen; Schuler, Benjamin (2013). Single-molecule spectroscopy of cold denaturation and the temperature-induced collapse of unfolded proteins. Journal of the American Chemical Society, 135(38):14040-14043.
  • Schuler, Benjamin; Hofmann, Hagen (2013). Single-molecule spectroscopy of protein folding dynamics - expanding scope and timescales. Current Opinion in Structural Biology, 23(1):36-47.
  • Haenni, Dominik; Zosel, Franziska; Reymond, Luc; Nettels, Daniel; Schuler, Benjamin (2013). Intramolecular distances and dynamics from the combined Photon statistics of single-molecule FRET and photoinduced electron transfer. Journal of Physical Chemistry B, 117(42):13015-13028.
  • Wunderlich, Bengt; Nettels, Daniel; Benke, Stephan; Clark, Jennifer; Weidner, Sascha; Hofmann, Hagen; Pfeil, Shawn H; Schuler, Benjamin (2013). Microfluidic mixer designed for performing single-molecule kinetics with confocal detection on timescales from milliseconds to minutes. Nature Protocols, 8(8):1459-1474.

Pagination