Publications of the Jinek Group

ZORA Publication List

Publications

• 2019

  • Jinek, Martin (2019). Uncut but primed for change. The CRISPR journal, 2(6):352-354.
  • Allain, Frédéric H-T; Jinek, Martin (2019). Editorial overview: Protein-nucleic acid interactions - cryo-EM, what else?. Current Opinion in Structural Biology, 59:vi-viii.
  • Kumar, Ananthanarayanan; Clerici, Marcello; Muckenfuss, Lena M; Passmore, Lori A; Jinek, Martin (2019). Mechanistic insights into mRNA 3'-end processing. Current Opinion in Structural Biology, 59:143-150.
  • Dumeau, Charles-Etienne; Monfort, Asun; Kissling, Lucas; Swarts, Daan C; Jinek, Martin; Wutz, Anton (2019). Introducing gene deletions by mouse zygote electroporation of Cas12a/Cpf1. Transgenic research, 28(5-6):525-535.
  • Boneberg, Franziska M; Brandmann, Tobias; Kobel, Lena; van den Heuvel, Jasmin; Bargsten, Katja; Bammert, Lukas; Kutay, Ulrike; Jinek, Martin (2019). Corrigendum: Molecular mechanism of the RNA helicase DHX37 and its activation by UTP14A in ribosome biogenesis. RNA, 25(11):1576.
  • Hegge, Jorrit W; Swarts, Daan C; Chandradoss, Stanley D; Cui, Tao Ju; Kneppers, Jeroen; Jinek, Martin; Joo, Chirlmin; van der Oost, John (2019). DNA-guided DNA cleavage at moderate temperatures by Clostridium butyricum Argonaute. Nucleic Acids Research, 47(11):5809-5821.
  • Boneberg, Franziska M; Brandmann, Tobias; Kobel, Lena; van den Heuvel, Jasmin; Bargsten, Katja; Bammert, Lukas; Kutay, Ulrike; Jinek, Martin (2019). Molecular mechanism of the RNA helicase DHX37 and its activation by UTP14A in ribosome biogenesis. RNA, 25(6):685-701.
  • Ricci, Clarisse G; Chen, Janice S; Miao, Yinglong; Jinek, Martin; Doudna, Jennifer A; McCammon, J Andrew; Palermo, Giulia (2019). Deciphering Off-Target Effects in CRISPR-Cas9 through Accelerated Molecular Dynamics. ACS Central Science, 5(4):651-662.
  • Swarts, Daan C; Jinek, Martin (2019). Mechanistic Insights into the cis- and trans-Acting DNase Activities of Cas12a. Molecular Cell, 73(3):589-600.e4.
  • Kroupova, Alena; Ivaşcu, Anastasia; Reimão-Pinto, Madalena M; Ameres, Stefan L; Jinek, Martin (2019). Structural basis for acceptor RNA substrate selectivity of the 3' terminal uridylyl transferase Tailor. Nucleic Acids Research, 47(2):1030-1042.
  • Savić, Nataša; Ringnalda, Femke Cas; Berk, Christian; Bargsten, Katja; Hall, Jonathan; Jinek, Martin; Schwank, Gerald (2019). In vitro Generation of CRISPR-Cas9 Complexes with Covalently Bound Repair Templates for Genome Editing in Mammalian Cells.. Bio-protocol, 9(1):1-48.

• 2018

  • Nishimura, Tamiko; Fakim, Hana; Brandmann, Tobias; Youn, Ji-Young; Gingras, Anne-Claude; Jinek, Martin; Fabian, Marc R (2018). Human MARF1 is an endoribonuclease that interacts with the DCP1:2 decapping complex and degrades target mRNAs. Nucleic Acids Research, 46(22):12008-12021.
  • Savic, Natasa; Ringnalda, Femke C A S; Lindsay, Helen; Berk, Christian; Bargsten, Katja; Li, Yizhou; Neri, Dario; Robinson, Mark D; Ciaudo, Constance; Hall, Jonathan; Jinek, Martin; Schwank, Gerald (2018). Covalent linkage of the DNA repair template to the CRISPR-Cas9 nuclease enhances homology-directed repair. eLife, 7:33761.
  • Swarts, Daan C; Jinek, Martin (2018). Cas9 versus Cas12a/Cpf1: Structure-function comparisons and implications for genome editing. Wiley Interdisciplinary Reviews. RNA, 9:e1481.
  • Brandmann, Tobias; Fakim, Hana; Padamsi, Zoya; Youn, Ji-Young; Gingras, Anne-Claude; Fabian, Marc R; Jinek, Martin (2018). Molecular architecture of LSM14 interactions involved in the assembly of mRNA silencing complexes. The EMBO Journal, 37(7):e97869.
  • Clerici, Marcello; Faini, Marco; Muckenfuss, Lena M; Aebersold, Ruedi; Jinek, Martin (2018). Author Correction: Structural basis of AAUAAA polyadenylation signal recognition by the human CPSF complex. Nature Structural & Molecular Biology, 25(4):355.
  • Clerici, Marcello; Faini, Marco; Muckenfuss, Lena M; Aebersold, Ruedi; Jinek, Martin (2018). Structural basis of AAUAAA polyadenylation signal recognition by the human CPSF complex. Nature Structural & Molecular Biology, 25(2):135-138.
  • Vlot, Marnix; Houkes, Joep; Lochs, Silke J A; Swarts, Daan C; Zheng, Peiyuan; Kunne, Tim; Mohanraju, Prarthana; Anders, Carolin; Jinek, Martin; van der Oost, John; Dickman, Mark J; Brouns, Stan J J (2018). Bacteriophage DNA glucosylation impairs target DNA binding by type I and II but not by type V CRISPR-Cas effector complexes. Nucleic Acids Research, 46(2):873-885.
  • Palermo, Giulia; Chen, Janice S; Ricci, Clarisse G; Rivalta, Ivan; Jinek, Martin; Batista, Victor S; Doudna, Jennifer A; McCammon, J Andrew (2018). Key role of the REC lobe during CRISPR-Cas9 activation by 'sensing', 'regulating', and 'locking' the catalytic HNH domain. Quarterly reviews of biophysics, 51:e91.

• 2017

  • Clerici, Marcello; Faini, Marco; Aebersold, Ruedi; Jinek, Martin (2017). Structural insights into the assembly and polyA signal recognition mechanism of the human CPSF complex. eLife, 6:e33111.
  • Palermo, Giulia; Ricci, Clarisse G; Fernando, Amendra; Basak, Rajshekhar; Jinek, Martin; Rivalta, Ivan; Batista, Victor S; McCammon, J Andrew (2017). Protospacer Adjacent Motif-Induced Allostery Activates CRISPR-Cas9. Journal of the American Chemical Society, 139(45):16028-16031.
  • Garcia-Doval, Carmela; Jinek, Martin (2017). Molecular architectures and mechanisms of Class 2 CRISPR-associated nucleases. Current Opinion in Structural Biology, 47:157-166.
  • Niewoehner, Ole; Jinek, Martin (2017). Specialized weaponry: how a type III-A CRISPR-cas system excels at combating phages. Cell Host & Microbe, 22(3):258-259.
  • Niewoehner, Ole; Garcia-Doval, Carmela; Rostøl, Jakob T; Berk, Christian; Schwede, Frank; Bigler, Laurent; Hall, Jonathan; Marraffini, Luciano A; Jinek, Martin (2017). Type III CRISPR-Cas systems produce cyclic oligoadenylate second messengers. Nature, 548(7669):543-548.
  • Palermo, Giulia; Miao, Yinglong; Walker, Ross C; Jinek, Martin; McCammon, J Andrew (2017). CRISPR-Cas9 conformational activation as elucidated from enhanced molecular simulations. Proceedings of the National Academy of Sciences of the United States of America, 114(28):7260-7265.
  • Swarts, Daan C; van der Oost, John; Jinek, Martin (2017). Structural basis for guide RNA processing and seed-dependent DNA targeting by CRISPR-Cas12a. Molecular Cell, 66(2):221-233.e4.

• 2016

  • Reimão-Pinto, Madalena M; Manzenreither, Raphael A; Burkard, Thomas R; Sledz, Pawel; Jinek, Martin; Mechtler, Karl; Ameres, Stefan L (2016). Molecular basis for cytoplasmic RNA surveillance by uridylation-triggered decay in Drosophila. The EMBO Journal, 35(22):2417-2434.
  • Lindsay, Helen; Burger, Alexa; Biyong, Berthin; Felker, Anastasia; Hess, Christopher; Zaugg, Jonas; Chiavacci, Elena; Anders, Carolin; Jinek, Martin; Mosimann, Christian; Robinson, Mark D (2016). CrispRVariants charts the mutation spectrum of genome engineering experiments. Nature Biotechnology, 34(7):701-702.
  • Burger, Alexa; Lindsay, Helen; Felker, Anastasia; Hess, Christopher; Anders, Carolin; Chiavacci, Elena; Zaugg, Jonas; Weber, Lukas M; Catena, Raul; Jinek, Martin; Robinson, Mark D; Mosimann, Christian (2016). Maximizing mutagenesis with solubilized CRISPR-Cas9 ribonucleoprotein complexes. Development, 143(11):2025-2037.
  • Anders, Carolin; Bargsten, Katja; Jinek, Martin (2016). Structural Plasticity of PAM Recognition by Engineered Variants of the RNA-Guided Endonuclease Cas9. Molecular Cell, 61(6):895-902.
  • Olieric, Vincent; Weinert, Tobias; Finke, Aaron D; Anders, Carolin; Li, Dianfan; Olieric, Natacha; Borca, Camelia N; Steinmetz, Michel O; Caffrey, Martin; Jinek, Martin; Wang, Meitian (2016). Data-collection strategy for challenging native SAD phasing. Acta Crystallographica. Section D: Structural Biology, 72(Pt 3):421-429.
  • Niewoehner, Ole; Jinek, Martin (2016). Structural basis for the endoribonuclease activity of the type III-A CRISPR-associated protein Csm6. RNA, 22(3):318-329.
  • Palermo, Giulia; Miao, Yinglong; Walker, Ross C; Jinek, Martin; McCammon, J Andrew (2016). Striking Plasticity of CRISPR-Cas9 and Key Role of Non-target DNA, as Revealed by Molecular Simulations. ACS Central Science, 2(10):756-763.
  • Śledź, Paweł; Jinek, Martin (2016). Structural insights into the molecular mechanism of the m(6)A writer complex. eLife, 5:1-16.

Pagination