Publications of the Perica Group

ZORA Publication List

Publications

• 2024

  • Notbohm, Judith; Perica, Tina (2024). Biochemistry and genetics are coming together to improve our understanding of genotype to phenotype relationships. Current Opinion in Structural Biology, 89:102952.

• 2023

  • Mathy, Christopher J P; Mishra, Parul; Flynn, Julia M; Perica, Tina; Mavor, David; Bolon, Daniel N A; Kortemme, Tanja (2023). A complete allosteric map of a GTPase switch in its native cellular network. Cell Systems, 14(3):237-246.e7.

• 2021

  • Perica, Tina; Mathy, Christopher J P; Xu, Jiewei; Jang, Gwendolyn Μ; Zhang, Yang; Kaake, Robyn; Ollikainen, Noah; Braberg, Hannes; Swaney, Danielle L; Lambright, David G; Kelly, Mark J S; Krogan, Nevan J; Kortemme, Tanja (2021). Systems-level effects of allosteric perturbations to a model molecular switch. Nature, 599(7883):152-157.

• 2014

  • Perica, Tina; Kondo, Yasushi; Tiwari, Sandhya P; McLaughlin, Stephen H; Kemplen, Katherine R; Zhang, Xiuwei; Steward, Annette; Reuter, Nathalie; Clarke, Jane; Teichmann, Sarah A (2014). Evolution of oligomeric state through allosteric pathways that mimic ligand binding. Science, 346(6216):1254346.

• 2013

  • Zhang, Xiuwei; Perica, Tina; Teichmann, Sarah A (2013). Evolution of protein structures and interactions from the perspective of residue contact networks. Current Opinion in Structural Biology, 23(6):954-963.
  • Roller, Masa; Lucić, Vedran; Nagy, István; Perica, Tina; Vlahovicek, Kristian (2013). Environmental shaping of codon usage and functional adaptation across microbial communities. Nucleic Acids Research, 41(19):8842-8852.
  • Marsh, Joseph A; Hernández, Helena; Hall, Zoe; Ahnert, Sebastian E; Perica, Tina; Robinson, Carol V; Teichmann, Sarah A (2013). Protein complexes are under evolutionary selection to assemble via ordered pathways. Cell, 153(2):461-470.

• 2012

  • Liberles, David A; Teichmann, Sarah A; Bahar, Ivet; Bastolla, Ugo; Bloom, Jesse; Bornberg-Bauer, Erich; Colwell, Lucy J; de Koning, A P Jason; Dokholyan, Nikolay V; Echave, Julian; Elofsson, Arne; Gerloff, Dietlind L; Goldstein, Richard A; Grahnen, Johan A; Holder, Mark T; Lakner, Clemens; Lartillot, Nicholas; Lovell, Simon C; Naylor, Gavin; Perica, Tina; Pollock, David D; Pupko, Tal; Regan, Lynne; Roger, Andrew; Rubinstein, Nimrod; Shakhnovich, Eugene; Sjölander, Kimmen; Sunyaev, Shamil; Teufel, Ashley I; Thorne, Jeffrey L; et al (2012). The interface of protein structure, protein biophysics, and molecular evolution. Protein Science, 21(6):769-85.
  • Perica, Tina; Marsh, Joseph A; Sousa, Filipa L; Natan, Eviatar; Colwell, Lucy J; Ahnert, Sebastian E; Teichmann, Sarah A (2012). The emergence of protein complexes: quaternary structure, dynamics and allostery. Colworth Medal Lecture. Biochemical Society Transactions, 40(3):475-491.
  • Perica, Tina; Chothia, Cyrus; Teichmann, Sarah A (2012). Evolution of oligomeric state through geometric coupling of protein interfaces. Proceedings of the National Academy of Sciences of the United States of America, 109(21):8127-8132.

• 2010

  • Perica, Tina; Chothia, Cyrus (2010). Ubiquitin--molecular mechanisms for recognition of different structures. Current Opinion in Structural Biology, 20(3):367-376.

• 2008

  • Crosetto, Nicola; Bienko, Marzena; Hibbert, Richard G; Perica, Tina; Ambrogio, Chiara; Kensche, Tobias; Hofmann, Kay; Sixma, Titia K; Dikic, Ivan (2008). Human Wrnip1 is localized in replication factories in a ubiquitin-binding zinc finger-dependent manner. Journal of Biological Chemistry, 283(50):35173-35185.